This is an archive. See https://lamastex.github.io for current LaMaStEx activities.

CodemlZ -- Modified Codeml Package for Detecting Physicochemical Selection

Source Code

  • Download Source code for codemlZ,
  • Extract (tar zxvf paml3.14.Z.tgz) in Gnu/Linux,*Linux,Unix,Solaris or Mac OS X,
  • Read README.PhysChem.txt in paml3.14.Z
  • Using Cygwin in Windows David Yu has successfully compiled and tested codemlZ (Communication Details and PhysChem_6MHC.zip for Windows XP SP2 machine).

Appropriate Citation

"Detecting site-specific physicochemical selective pressures: applications to the class-I HLA of the human major histocompatibility complex and the SRK of the plant sporophytic self-incompatibility system," Raazesh Sainudiin, Wendy Shuk Wan Wong, Krithika Yogeeswaran, June Nasrallah, Ziheng Yang and Rasmus Nielsen, Journal of Molecular Evolution 2005 60: 315-326 (Preprint)

Last modified on Thursday, 01-Sep-2016 18:11:28 MST and served on Saturday, 21-Oct-2017 06:42:23 MST.

  • Laboratory for Mathematical Statistical Experiments
    6459.83826, 17.64860, 31
    Uppsala Centre
    Sweden
  • raazesh.sainudiin@gmail.com
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